MODELTEST 3.06 README

 

 

LAST UPDATE

In the last version of Modeltest (3.06), an important bug was fixed in the WINDOWS version by which the file scores.txt was always sued s the input file. Please repeat the analysis done with version 3.05b in Windows. For the Mac, the changes are only in the output format.

 

QUICK INSTRUCTIONS

The input of Modeltest is a set of likelihood scores corresponding to the specific data set and each one of 56 models. The easiest way of obtaining these scores from an alignment of DNA sequences is using PAUP*. A block of commands for PAUP* is provided below in the commands file ("modelblock3"). Follow these steps:

 

1) Open your data file and execute it in PAUP

 

2) Open the command file (modelblock3) and execute it

 

3) PAUP* starts to work in the data following the commands. Once is finished you will see a file called "model.scores" in the same directory as the command file. It is useful to change the name of this file to "yourdataname.scores".

 

4) Run the file "yourdataname.scores" through Modeltest. This is done in a Macintosh just double-clicking in the application provided. However, in PC's you have to run Modeltest through the command prompt (DOS window).

 

Alternatively, if you are familiar with PAUP*, you can add the PAUP* commands after your data block directly in your data file and execute it.

 

It is highly recommended to read the documentation!

 

I can help you at david.posada@byu.edu

 

 

David

 

April 23, 2001

 

 

This program is free software; you can redistribute it and/or

modify it under the terms of the GNU General Public License

as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

 

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.

 

     You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.