This Frame is used to control the CARNAC running process.
The CARNAC process can be stop and restart. When you stop and restart, the process re-run from beginning (the first sequence). There is no way to froze the process.
You can delete all files by clicking on the reset button.
There is two sort of folded files:
- Pair folded file
- Consensus folded file
You can visualize for each of them the backbone representation of the secondary structure. This is done by selecting the file you want to view and right click then select view in the pop-up menu or double click on it. The file is then open in an other frame: the backbone frame.
You can visualize the secondary structure with naview (for that you need to have naview & pl2ps & a postscript displayer on your computer see section configuration for details) by right click then select view in naview.
You can finally view the structure in text ct format : right click then select view ct file